Annotation Database for Human S/MARs.

References and Credits:

• Heng,H.H.Q. (2004) Chromatin loops are selectively anchored using scaffold/matrix-attachment regions. J. Cell Sci., 117, 999–1008.
  
  
• Mathai,J., Mittal,S.P.K., Alam,A., Ranade,P., Mogare,D., Patel,S., Saxena,S., Ghorai,S., Kulkarni,A.P. and Chattopadhyay,S. (2016) SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Sci. Rep., 6, 33779.
  
  
• Sinha,S., Malonia,S.K., Mittal,S.P.K., Singh,K., Kadreppa,S., Kamat,R., Mukhopadhyaya,R., Pal,J.K. and Chattopadhyay,S. (2010) Coordinated regulation of p53 apoptotic targets BAX and PUMA by SMAR1 through an identical MAR element. EMBO J., 29, 830–842.
  
  
• Singh,R.K., Sasikala,W.D. and Mukherjee,A. (2015) Molecular Origin of DNA Kinking by Transcription Factors. J. Phys. Chem. B, 119, 11590–11596.
  
  
• Shaposhnikov,S.A., Akopov,S.B., Chernov,I.P., Thomsen,P.D., Joergensen,C., Collins,A.R., Frengen,E. and Nikolaev,L.G. (2007) A map of nuclear matrix attachment regions within the breast cancer loss-of-heterozygosity region on human chromosome 16q22.1. Genomics, 89, 354–361.
  
  
• Heng,H.H., Krawetz,S.A., Lu,W., Bremer,S., Liu,G. and Ye,C.J. (2001) Re-defining the chromatin loop domain. Cytogenet. Cell Genet., 93, 155–61.
  
  
• Pascuzzi,P.E., Flores-Vergara,M.A., Lee,T.-J., Sosinski,B., Vaughn,M.W., Hanley-Bowdoin,L., Thompson,W.F. and Allen,G.C. (2014) In vivo mapping of arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly(dA:dT) tracts. Plant Cell, 26, 102–20.
  
  
• Craigie,R. and Bushman,F.D. (2012) HIV DNA integration. Cold Spring Harb. Perspect. Med., 2, a006890.
  
  



• The MARome database is designed by Nitin P. Narwade. MARome is implemented using Spring Framework - 1.2.1, Apache Maven, HTML5, JavaScript5, CSS3, Bootstrap3, Java - 1.8 and PostgreSQL - 9.3.19